Etymology
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ana- 

before vowels an-, word-forming element meaning: 1. "upward, up in place or time," 2. "back, backward, against," 3. "again, anew," from Greek ana (prep.) "up, on, upon; up to, toward; throughout; back, backwards; again, anew," from an extended form of PIE root *an- (1) "on, upon, above" (see on, which is the English cognate). In old medical prescriptions, ana by itself meant "an equal quantity of each."

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a- (1)

prefix or inseparable particle, a conglomerate of various Germanic and Latin elements.

In words derived from Old English, it commonly represents Old English an "on, in, into" (see on (prep.)), as in alive, above, asleep, aback, abroad, afoot, ashore, ahead, abed, aside, obsolete arank "in rank and file," etc., forming adjectives and adverbs from nouns, with the notion "in, at; engaged in." In this use it is identical to a (2).

It also can represent Middle English of (prep.) "off, from," as in anew, afresh, akin, abreast. Or it can be a reduced form of the Old English past participle prefix ge-, as in aware.

Or it can be the Old English intensive a-, originally ar- (cognate with German er- and probably implying originally "motion away from"), as in abide, arise, awake, ashamed, marking a verb as momentary, a single event. Such words sometimes were refashioned in early modern English as though the prefix were Latin (accursed, allay, affright are examples).

In words from Romanic languages, often it represents reduced forms of Latin ad "to, toward; for" (see ad-), or ab "from, away, off" (see ab-); both of which by about 7c. had been reduced to a in the ancestor of Old French. In a few cases it represents Latin ex.

[I]t naturally happened that all these a- prefixes were at length confusedly lumped together in idea, and the resultant a- looked upon as vaguely intensive, rhetorical, euphonic, or even archaic, and wholly otiose. [OED]
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onto- 

word-forming element meaning "a being, individual; being, existence," from stem of Greek on (genitive ontos) "being," neuter present participle of einai "to be" (from PIE root *es- "to be").

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oneiro- 

before vowels oneir-, word-forming element meaning "of or pertaining to a dream or dreams," from Greek oneiros "a dream," a word of uncertain origin, perhaps related to Armenian anurj, Albanian (Gheg) âdërrë.

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hypsi- 
word-forming element meaning "high, on high, lofty," from Greek hypsi (adv.) "aloft, on high," related to hypsos "height" (see hypso-).
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cis- 

word-forming element meaning "on the near side of, on this side," from Latin preposition cis "on this side" (in reference to place or time), related to citra (adv.) "on this side," from PIE *ki-s, suffixed form of root *ko-, the stem of demonstrative pronoun meaning "this." Opposed to trans- or ultra-. Originally only of place, sometimes 19c. of time; 21c. of life situations (such as cis-gender, which is attested by 2011).

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amphi- 
before a vowel amph-, word-forming element meaning "on both sides, of both kinds; on all sides, all around," from Greek amphi (prep., adv.) "round about, on both sides of, all around; about, regarding," which is cognate with Latin ambi-, both from PIE root *ambhi- "around."
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intra- 
word-forming element meaning "within, inside, on the inside," from Latin preposition intra "on the inside, within, in, into;" of time, "during, in the course of," related to inter "between," from PIE *en-t(e)ro-, from root *en "in." Commonly opposed to extra-, and compare inter-. The use of intra as a prefix was rare in classical Latin.
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Graeco- 
also Greco-, modern word-forming element, from Latin Graecus "Greek" (see Greek (n.)) on model of Anglo-, Franco-, etc.
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intro- 
word-forming element, from Latin intro (adv.) "in, on the inside, within, to the inside," from PIE *en-t(e)ro-, suffixed form of root *en "in."
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